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Principal Scientist, High Throughput Imaging

Flagship Pioneering
Flagship Pioneering Salary
Cambridge, MA Full Time
POSTED ON 3/26/2025
AVAILABLE BEFORE 5/11/2025
Company Summary

Lila Sciences is a privately held, early-stage technology company pioneering the application of artificial intelligence to transform every aspect of the scientific method. Lila is backed by Flagship Pioneering, which brings the courage, long-term vision, and resources needed to realize unreasonable results. Join our mission-driven team and contribute to the future of science.

Our Life Sciences effort is leveraging AI and high-throughput automation for valuable therapeutic discovery and development across biological modalities.

At Lila, we are uniquely cross-functional and collaborative. We are actively reimagining the way teams work together and communicate. Therefore, we seek individuals with an inclusive mindset and a diversity of thought. Our teams thrive in unstructured and creative environments. All voices are heard because we know that experience comes in many forms, skills are transferable, and passion goes a long way.

If this sounds like an environment you’d love to work in, even if you only have some of the experience listed below, please apply.

The Role

We are seeking a Principal Scientist specializing in high-throughput imaging to lead the development of innovative imaging-based solutions for established cell lines, primary cells, and stem cells. The successful candidate will bring deep expertise in imaging modalities, data analysis, and assay development to advance our drug discovery platform. Leadership experience and the ability to foster collaboration across teams are essential.

Key Responsibilities

  • Lead the development and optimization of high-throughput cell-based assay workflows for various cell types, including established lines, primary cells, and stem cells.
  • Design, validate, and implement advanced imaging assays for phenotypic screening, functional characterization, and mechanistic studies.
  • Develop automated imaging pipelines in collaboration with automation engineers, ensuring robust integration with existing systems.
  • Collaborate with cross-functional teams to incorporate AI-guided analysis and molecular design into imaging workflows.
  • Analyze large-scale imaging datasets, extracting quantitative insights to support discovery and development goals.
  • Stay at the forefront of high-content imaging, microscopy, and image analysis technologies.
  • Mentor junior scientists and foster a culture of innovation and continuous learning.

Qualifications

  • Ph.D. in Cell Biology, Molecular Biology, Bioengineering, or a related field with 8 years of relevant experience in high-throughput imaging and automation.
  • Proven expertise in imaging techniques such as fluorescence microscopy, high-content screening, and live-cell imaging.
  • Experience with image analysis software and proficiency in coding for data analysis (Python preferred).
  • Strong track record in developing assays for primary and stem cells.
  • Familiarity with AI-driven analysis and its application in imaging is a plus.
  • Demonstrated ability to lead cross-functional teams and manage complex projects.
  • Exceptional communication and problem-solving skills.

Working at Lila, you would have access to advanced technology in the areas of:

  • AI experimental design and simulation
  • Automated custom instrumentation
  • Generative molecular and material design

About Flagship

Flagship Pioneering is a biotechnology company that invents and builds platform companies, each with the potential for multiple products that transform human health or sustainability. Since its launch in 2000, Flagship has originated and fostered more than 100 scientific ventures, resulting in more than $90 billion in aggregate value. Many of the companies Flagship has founded have addressed humanity’s most urgent challenges: vaccinating billions of people against COVID-19, curing intractable diseases, improving human health, preempting illness, and feeding the world by improving the resiliency and sustainability of agriculture. Flagship has been recognized twice on FORTUNE’s “Change the World” list, an annual ranking of companies that have made a positive social and environmental impact through activities that are part of their core business strategies, and has been twice named to Fast Company’s annual list of the World’s Most Innovative Companies. Learn more about Flagship at www.flagshippioneering.com.

Flagship Pioneering and our ecosystem companies are committed to equal employment opportunity regardless of race, color, ancestry, religion, sex, national origin, sexual orientation, age, citizenship, marital status, disability, gender identity or Veteran status.

Recruitment & Staffing Agencies: Flagship Pioneering and its affiliated Flagship Lab companies (collectively, “FSP”) do not accept unsolicited resumes from any source other than candidates. The submission of unsolicited resumes by recruitment or staffing agencies to FSP or its employees is strictly prohibited unless contacted directly by Flagship Pioneering’s internal Talent Acquisition team. Any resume submitted by an agency in the absence of a signed agreement will automatically become the property of FSP, and FSP will not owe any referral or other fees with respect thereto.

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