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Clinical Bioinformatics Engineer

Sonic Reference Laboratory
Sonic Reference Laboratory Salary
Austin, TX Full Time
POSTED ON 4/14/2025
AVAILABLE BEFORE 5/9/2025

Job Functions, Duties, Responsibilities and Position Qualifications :

The Clinical Bioinformatics Engineer will play a vital role in the development and management of web applications, databases, and data engineering efforts within a Clinical / NGS environment at Sonic Reference Laboratory. This position offers an exciting opportunity to work in a dynamic setting that is dedicated to advancing healthcare technology.

Location : Austin, TX 78728

Status : Full-time

Schedule / Shift : Hybrid, Business hours

Responsibilities

  • Manage and improve bioinformatics-related clinical assay operations, ensuring timely updates and resolving daily issues effectively.
  • Innovate and implement automation solutions to optimize workflows and processes.
  • Collaborate closely with laboratory instruments to assist in connectivity and troubleshooting.
  • Apply data engineering and automation techniques to enhance efficiency within the Clinical / NGS Lab.
  • Maintain a positive and harmonious working environment within a diverse team.

Requirements

Skills :

  • Proficient in multiple programming languages including Python, Shell, R, and Java.
  • Experience with modern relational database management and development (PostgreSQL / MySQL / MsSQL).
  • Strong capabilities in utilizing Linux operating systems, particularly within a High-Performance Computing (HPC) environment.
  • Clear and effective communication of technical concepts to non-technical staff.
  • Understanding of Next Generation Sequencing (NGS) data analysis processes such as alignment, variant calling, annotations, and gene expression.
  • Ability to identify and employ statistical methods for data analysis and visualization.
  • Knowledge of best practices for software development life cycle, including coding standards, code reviews, source control management (Git), and deployment processes.
  • Experience in front-end web application development is a plus.
  • Familiarity with the Django web framework is an additional advantage.
  • Previous experience in a CAP / CLIA or NYSDOH certified clinical laboratory is preferred.
  • Adept at explaining technical concepts to a varied audience and thriving in diverse team settings.
  • Strong commitment to quality, accuracy, and consistency in all undertakings.
  • Ability to manage deadlines while adapting to frequent changes in workload and priorities.
  • Excellent written and oral communication skills for effective data reporting and procedures documentation.
  • Qualifications :

  • Software and Database Skills : Python, Django, SQL, HTML, CSS, Node.js, and Shell scripting.
  • Operating Systems : Linux and Windows.
  • Education :

  • MS in Biomedical Engineering, Computer Science, or Bioinformatics, or
  • Bachelor's degree in Computer Science with 2 years of relevant work experience in the Bioinformatics or IT field.
  • License / Certification :

  • No specific licenses or certifications required.
  • Scheduled Weekly Hours : 40

    Work Shift :

    Job Category : Information Technology

    Company : Sonic Reference Laboratory, Inc

    Sonic Healthcare USA is an equal opportunity employer dedicated to fostering a diverse and inclusive workplace. We are proud to uphold a culture that respects and celebrates differences, and we prohibit discrimination and harassment based on race, color, sex, religion, age, national origin, disability, genetics, veteran status, sexual orientation, gender identity or expression, or any other characteristic protected by law.

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