What are the responsibilities and job description for the Data Scientist (6257U), Quantitative Biosciences - #76306 position at University of California, Berkeley?
About Berkeley
At the University of California, Berkeley, we are dedicated to fostering a community where everyone feels welcome and can thrive. Our culture of openness, freedom, and belonging makes it a special place for students, faculty, and staff.
As a world-leading institution, Berkeley is known for its academic and research excellence, public mission, diverse student body, and commitment to equity and social justice. Since our founding in 1868, we have driven innovation, creating global intellectual, economic, and social value.
We are looking for applicants who reflect California's diversity and want to be part of an inclusive, equity-focused community that views education as a matter of social justice. Please consider whether your values align with our Guiding Values and Principles, Principles of Community, and Strategic Plan.
At UC Berkeley, we believe that learning is a fundamental part of working and provide space for supportive colleague communities via numerous employee resource groups (staff organizations). Our goal is for everyone on the Berkeley campus to feel supported and equipped to realize their full potential. We actively support this by providing all of our full-time staff employees with at least 80 hours (10 days) of paid time per year to engage in professional development activities. Find out more about how you can grow your career at UC Berkeley.
Departmental Overview
The Arkin laboratory for systems and synthetic biology seeks to uncover the evolutionary design principles of cellular networks and populations and to exploit them for applications. To do so, they are developing a framework to effectively combine comparative functional genomics, quantitative measurement of cellular dynamics, biophysical modeling of cellular networks, and cellular circuit design to ultimately facilitate applications in health, the environment, and the circular bioeconomy on earth and in space. We lead three major projects : The Ecosystems and Networks Integrated with Genes and Molecular Assemblies (ENIGMA) program which seeks to advance a predictive, mechanistic understanding of microbial biology and the impact of microbial communities on their ecosystems; The DOE Systems Biology Knowledgebase (KBase) is a software and data science platform designed to meet the grand challenge of transparent, reusable, reproducible systems biology : predicting and designing biological function; and the Center for Utilization of Biological Engineering in Space (CUBES) which aims to create a high-efficiency sustainable and regenerable biomanufacturing platform for functional food, pharmaceuticals, and materials for prolonged deep space missions. They also work on 'living' therapies such as phage to treat antimicrobial resistant microbes or the creation of microbial probiotics that sense and protect against respiratory infection.
Position Summary
This position is for an experienced data scientist / engineer to help build a data integration, analysis, and management system for an exciting new multidisciplinary research program aimed at designing microbial communities (“pre- and probiotics”) to protect human airways from infection. The project's approach integrates advanced microbiome engineering, multimodal functional metagenomics of human and mouse samples, high-throughput microbial isolation and characterization, model-driven synthetic community composition, and iterative design-build-test cycles to move formulations toward clinical translation. Data is coming from diverse locations, and we are integrating to drive cycles of model-supported design, assemble, test, and learn cycles for protective lung probiotics. We will leverage data infrastructure being developed by collaborative projects as a foundation, but specialized approaches will be required here. The team is highly collaborative and working towards well-defined goals and milestones.
Application Review Date
The First Review Date for this job is : 02 / 26 / 2025.
Responsibilities
- Set and maintain standards for data and metadata reporting, software documentation and version control, and protocol reproducibility across the project.
- Develop, implement, and maintain software pipelines and workflows for data integration, centralization, and harmonization, accommodating multiple data types (metagenomes, phenotypes, genomic annotations, etc.).
- Interact closely with collaborating teams to design and establish an integrated data framework that supports value-added analyses, visualization tools, and user-friendly data access for internal team members and the broader scientific community.
- Perform quality checks on datasets, troubleshoot issues, and implement best practices for data storage and version control and overall FAIR (Findable, Accessible, Interoperable, Reusable) data and software practice.
- Collaborate with modeling and machine learning experts to refine data processing methods and incorporate advanced analytics that enhance research outcomes.
- Support training of team members in data handling, informatics tools, and best practices in reproducible research.
- May attend program meetings as required, usually once a year.
Required Qualifications
Preferred Qualifications
Salary & Benefits
This is approximately a 2-year and 7-month, full-time (40 hours / week), contract appointment, eligible for UC benefits with the possibility of extension. This is an exempt position, which is paid monthly at an annual rate.
For information on the comprehensive benefits package offered by the University, please visit the University of California's Compensation & Benefits website.
Under California law, the University of California, Berkeley is required to provide a reasonable estimate of the compensation range for this role and should not offer a salary outside of the range posted in this job announcement. This range takes into account the wide range of factors that are considered in making compensation decisions including but not limited to experience, skills, knowledge, abilities, education, licensure and certifications, analysis of internal equity, and other business and organizational needs. It is not typical for an individual to be offered a salary at or near the top of the range for a position. Salary offers are determined based on final candidate qualifications and experience.
The budgeted annual salary range that the University reasonably expects to pay for this position is $88,900.00 - $126,400.00.
How To Apply
Other Information
Misconduct
SB 791 and AB 810 Misconduct Disclosure Requirement : As a condition of employment, the final candidate who accepts a conditional offer of employment will be required to disclose if they have been subject to any final administrative or judicial decisions within the last seven years determining that they committed any misconduct; received notice of any allegations or are currently the subject of any administrative or disciplinary proceedings involving misconduct; have left a position after receiving notice of allegations or while under investigation in an administrative or disciplinary proceeding involving misconduct; or have filed an appeal of a finding of misconduct with a previous employer.
Misconduct” Means Any Violation Of The Policies Or Laws Governing Conduct At The Applicant’s Previous Place Of Employment, Including, But Not Limited To, Violations Of Policies Or Laws Prohibiting Sexual Harassment, Sexual Assault, Or Other Forms Of Harassment, Discrimination, Dishonesty, Or Unethical Conduct, As Defined By The Employer. For Reference, Below Are UC’s Policies Addressing Some Forms Of Misconduct
UC Sexual Violence and Sexual Harassment Policy
UC Anti-Discrimination Policy
Abusive Conduct in the Workplace
Equal Employment Opportunity
The University of California is an Equal Opportunity / Affirmative Action Employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, disability, or protected veteran status. For more information about your rights as an applicant, please see the U.S. Equal Employment Opportunity Commission poster.
The University of California's Affirmative action policy.
The University of California's Anti-Discrimination policy.#J-18808-Ljbffr
Salary : $88,900 - $126,400
